Author Title Type [ Year(Asc)]
Filters: Author is Katrina M Waters  [Clear All Filters]
2023
McClure RS, Rericha Y, Waters KM, Tanguay RL. 3' RNA-seq is superior to standard RNA-seq in cases of sparse data but inferior at identifying toxicity pathways in a model organism. Front Bioinform. 2023 ;3:1234218.
Rude CI, Tidwell LG, Tilton SC, Waters KM, Anderson KA, Tanguay RL. Coupling Environmental Whole Mixture Toxicity Screening with Unbiased RNA-Seq Reveals Site-Specific Biological Responses in Zebrafish. Toxics. 2023 ;11(3).
Bramer LM, Dixon HM, Degnan D, Rohlman D, Herbstman JB, Anderson KA, et al.. Preprint: Expanding the access of wearable silicone wristbands in community-engaged research through best practices in data analysis and integration. bioRxiv. 2023 ;.
Gosline SJC, Kim DNam, Pande P, Thomas DG, Truong L, Hoffman PD, et al.. The Superfund Research Program Analytics Portal: linking environmental chemical exposure to biological phenotypes. Sci Data. 2023 ;10(1):151.
2022
Shankar P, Garcia GR, La Du JK, Sullivan CM, Dunham CL, Goodale BC, et al.. The Ahr2-Dependent wfikkn1 Gene Influences Zebrafish Transcriptome, Proteome, and Behavior. Toxicol Sci. 2022 ;187(2):325-344.
Wilson LB, McClure RS, Waters KM, Simonich MT, Tanguay RL. Concentration-response gene expression analysis in zebrafish reveals phenotypically-anchored transcriptional responses to retene. Front Toxicol. 2022 ;4:950503.
Dixon HM, Bramer LM, Scott RP, Calero L, Holmes D, Gibson EA, et al.. Evaluating predictive relationships between wristbands and urine for assessment of personal PAH exposure. Environ Int. 2022 ;163:107226.
2021
Mansouri K, Karmaus AL, Fitzpatrick J, Patlewicz G, Pradeep P, Alberga D, et al.. CATMoS: Collaborative Acute Toxicity Modeling Suite. Environ Health Perspect. 2021 ;129(4):47013.
Shankar P, McClure RS, Waters KM, Tanguay RL. Gene co-expression network analysis in zebrafish reveals chemical class specific modules. BMC Genomics. 2021 ;22(1):658.
2020
Truong L, Marvel S, Reif DM, Thomas DG, Pande P, Dasgupta S, et al.. The multi-dimensional embryonic zebrafish platform predicts flame retardant bioactivity. Reprod Toxicol. 2020 ;96:359-369.
2019
Brown J, Phillips AR, Lewis DA, Mans M-A, Chang Y, Tanguay RL, et al.. Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration. BMC Bioinformatics. 2019 ;20(1):255.
Shankar P, Geier MC, Truong L, McClure RS, Pande P, Waters KM, et al.. Coupling Genome-wide Transcriptomics and Developmental Toxicity Profiles in Zebrafish to Characterize Polycyclic Aromatic Hydrocarbon (PAH) Hazard. Int J Mol Sci. 2019 ;20(10).
Dixon HM, Armstrong G, Barton ML, Bergmann AJ, Bondy M, Halbleib ML, et al.. Discovery of common chemical exposures across three continents using silicone wristbands. R Soc Open Sci. 2019 ;6(2):181836.
Messier KP, Tidwell LG, Ghetu C, Rohlman D, Scott RP, Bramer LM, et al.. Indoor versus Outdoor Air Quality during Wildfires. Environ Sci Technol Lett. 2019 ;6(12):696-701.
Thomas DG, Shankaran H, Truong L, Tanguay RL, Waters KM. Time-dependent behavioral data from zebrafish reveals novel signatures of chemical toxicity using point of departure analysis. Comput Toxicol. 2019 ;9:50-60.
Madeen EP, Siddens LK, Uesugi S, McQuistan TJ, Corley RA, Smith JN, et al.. Toxicokinetics of benzo[a]pyrene in humans: Extensive metabolism as determined by UPLC-accelerator mass spectrometry following oral micro-dosing. Toxicol Appl Pharmacol. 2019 ;364:97-105.
2018
Dixon HM, Scott RP, Holmes D, Calero L, Kincl L, Waters KM, et al.. Silicone wristbands compared with traditional polycyclic aromatic hydrocarbon exposure assessment methods. Anal Bioanal Chem. 2018 ;410(13):3059-3071.
Haggard DE, Noyes PD, Waters KM, Tanguay RL. Transcriptomic and phenotypic profiling in developing zebrafish exposed to thyroid hormone receptor agonists. Reprod Toxicol. 2018 ;77:80-93.
2017
Madeen EP, Löhr CV, You H, Siddens LK, Krueger SK, Dashwood RH, et al.. Dibenzo[def,p]chrysene transplacental carcinogenesis in wild-type, Cyp1b1 knockout, and CYP1B1 humanized mice. Mol Carcinog. 2017 ;56(1):163-171.
Wittwehr C, Aladjov H, Ankley G, Byrne HJ, de Knecht J, Heinzle E, et al.. How Adverse Outcome Pathways Can Aid the Development and Use of Computational Prediction Models for Regulatory Toxicology. Toxicol Sci. 2017 ;155(2):326-336.
Davie-Martin CL, Stratton KG, Teeguarden JG, Waters KM, Simonich SLMassey. Implications of Bioremediation of Polycyclic Aromatic Hydrocarbon-Contaminated Soils for Human Health and Cancer Risk. Environ Sci Technol. 2017 ;51(17):9458-9468.
2016
Teeguarden JG, Tan Y-M, Edwards SW, Leonard JA, Anderson KA, Corley RA, et al.. Completing the Link between Exposure Science and Toxicology for Improved Environmental Health Decision Making: The Aggregate Exposure Pathway Framework. Environ Sci Technol. 2016 ;50(9):4579-86.
Teeguarden JG, Tan Y-M, Edwards SW, Leonard JA, Anderson KA, Kile ML, et al.. Expanding on Successful Concepts, Models, and Organization. Environ Sci Technol. 2016 ;50(17):8921-2.
Haggard DE, Noyes PD, Waters KM, Tanguay RL. Phenotypically anchored transcriptome profiling of developmental exposure to the antimicrobial agent, triclosan, reveals hepatotoxicity in embryonic zebrafish. Toxicol Appl Pharmacol. 2016 ;308:32-45.
2015
Siddens LK, Bunde KL, Harper TA, McQuistan TJ, Löhr CV, Bramer LM, et al.. Cytochrome P450 1b1 in polycyclic aromatic hydrocarbon (PAH)-induced skin carcinogenesis: Tumorigenicity of individual PAHs and coal-tar extract, DNA adduction and expression of select genes in the Cyp1b1 knockout mouse. Toxicol Appl Pharmacol. 2015 ;287(2):149-160.

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